Genomic Prediction Tool

Single variant or batch VCF file prediction

Select the reference genome version

AlphaGenome provides regulatory variant effect predictions (requires API configuration)

Deep Learning model (LLM) for sequence context scoring

Example: chr17, chr3, 1

Example: 7577121, 123456

Example: A, G

Example: T, C

Format: Chr-Position-Reference-Alternate (e.g., 1-66565-A-T or chr1-66565-A-T)

Prediction Results

Variant:
⚠️ Multiple Transcripts Detected:

Gene Annotations

Model Score Rank Score Prediction
Model Score Rank Score Prediction
Model Score Rank Score Prediction

Score Statistics

Score Type Minimum Mean (Average) Maximum

HyenaDNA Model Results

Model Score Rank Score Prediction/Other
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Batch Prediction Results

0
Total Variants
0
Found in Database
0
Not Found
0
Total Transcripts
Chr Position Ref Alt Transcript Gene DANN MetaRNN REVEL AlphaMissense AlphaGenome (Raw Mean) HyenaDNA (LLR) CADD
Variant LiftOver Note Raw Min Raw Mean Raw Max Quantile Min Quantile Mean Quantile Max
Variant LiftOver Note LLR Score Interpretation
Variant Transcript Gene PolyPhen2 HDIV PolyPhen2 HVAR MutationTaster MutationAssessor FATHMM-XF VEST4 M-CAP DEOGEN2 BayesDel addAF ClinPred
Variant Transcript Gene MetaSVM Score MetaSVM Pred MetaLR Score MetaLR Pred REVEL Score REVEL Rank
Variant Transcript Gene DANN MetaRNN MVP gMVP PrimateAI ESM1b AlphaMissense MutFormer MisFit D
Variant Transcript Gene SIFT SIFT4G PROVEAN Eigen MPC PHACTboost
Variant Transcript ID Gene Ensembl Gene ID Protein ID UniProt HGVS (cDNA) HGVS (Protein) AA Position ClinVar ID ClinVar Significance
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